Contents | Spike Train Analysis Toolkit table of contents. |
binless | BINLESS Binless method analysis. |
binless_jack | BINLESS_JACK Binless method analysis with leave-one-out jackknife. |
binless_shuf | BINLESS_SHUF Binless method analysis with shuffled inputs. |
binlessembed | BINLESSEMBED Embed the data with the Legendre polynomials. |
binlessinfo | BINLESSINFO Compute information components using binless method. |
binlessopen | BINLESSOPEN Extract useful information for binless method. |
binlesswarp | BINLESSWARP Warp spike times. |
bootstrap_pr | BOOTSTRAP_PR Politis-Romano method for correlated bootstrap |
correlated_bootstrap | CORRELATED_BOOTSTRAP Calculate correlated bootstrap samples of P(X(t)) |
ctwmcmc | CTWMCMC Context-tree weighted method analysis to estimate information. |
ctwmcmcbridge | CTWMCMCBRIDGE Build CTW tree graph(s) and make MCMC samples. |
ctwmcmcinfo | CTWMCMCINFO Estimate information from CTW tree based entropy estimates. |
ctwmcmcsample | CTWMCMCSAMPLE Perform MCMC sampling of entropy on CTW tree graph(s). |
ctwmcmctree | CTWMCMCTREE Build full CTW tree graph(s) from data. |
directbin | DIRECTBIN Bin spike trains for direct method analysis. |
directcat | DIRECTCAT Direct method analysis to determine category-specific information. |
directcat_jack | DIRECTCAT_JACK Direct method analysis to determine category-specific information with leave-one-out jackknife. |
directcat_shuf | DIRECTCAT_SHUF Direct method analysis to determine category-specific information with shuffled inputs. |
directcondcat | DIRECTCONDCAT Condition data on category. |
directcondformal | DIRECTCONDFORMAL Condition data on both category and time slice. |
directcondtime | DIRECTCONDTIME Condition data on time slice. |
directcountclass | DIRECTCOUNTCLASS Count spike train words in each class. |
directcountcond | DIRECTCOUNTCOND Count spike train words in each class and disregarding class. |
directcounttotal | DIRECTCOUNTTOTAL Count spike train words disregarding class. |
directformal | DIRECTFORMAL Direct method analysis to determine formal information. |
entropy1d | ENTROPY1D Entropy from a 1-D histogram. |
entropy1dvec | ENTROPY1DVEC Entropy from a vector of 1-D histograms. |
info2d | INFO2D Information and entropies from a 2-D histogram. |
infocond | INFOCOND Information and entropies from conditional and total |
make | MAKE Compile functions in the Spike Train Analysis Toolkit. |
match_rate | MATCH_RATE Redraw samples to match spike rate |
matrix2hist2d | MATRIX2HIST2D Converts a 2-D matrix of counts to a 2-D histogram. |
metric | METRIC Metric space analysis |
metric_jack | METRIC_JACK Metric space analysis with leave-one-out jackknife. |
metric_shuf | METRIC_SHUF Metric space analysis with shuffled inputs. |
metricclust | METRICCLUST Cluster spike trains based on distance matrix. |
metricdist | METRICDIST Compute distances between sets of spike train pairs. |
metricopen | METRICOPEN Prepare input data structure for metric space analysis. |
multisitearray | MULTISITEARRAY Convert a multi-site input data structure |
multisitesubset | MULTISITESUBSET Extract a subset of sites from a multi-site |
staplot | STAPLOT Plot of a continuous signal input data structure. |
staraster | STARASTER Raster plot of an input data structure. |
staread | STAREAD Read STAD and STAM files into an input data structure. |
staversion | STAVERSION Return the version and revision number of the Spike Train Analysis Toolkit. |
stawrite | STAWRITE Write STAD and STAM files from an input data structure. |