Spike Train Analysis Toolkit Documentation  Spike Train Analysis Toolkit Function Reference

Spike Train Analysis Toolkit Function Reference

ContentsSpike Train Analysis Toolkit table of contents.
binlessBINLESS Binless method analysis.
binless_jackBINLESS_JACK Binless method analysis with leave-one-out jackknife.
binless_shufBINLESS_SHUF Binless method analysis with shuffled inputs.
binlessembedBINLESSEMBED Embed the data with the Legendre polynomials.
binlessinfoBINLESSINFO Compute information components using binless method.
binlessopenBINLESSOPEN Extract useful information for binless method.
binlesswarpBINLESSWARP Warp spike times.
bootstrap_prBOOTSTRAP_PR Politis-Romano method for correlated bootstrap
correlated_bootstrapCORRELATED_BOOTSTRAP Calculate correlated bootstrap samples of P(X(t))
ctwmcmcCTWMCMC Context-tree weighted method analysis to estimate information.
ctwmcmcbridgeCTWMCMCBRIDGE Build CTW tree graph(s) and make MCMC samples.
ctwmcmcinfoCTWMCMCINFO Estimate information from CTW tree based entropy estimates.
ctwmcmcsampleCTWMCMCSAMPLE Perform MCMC sampling of entropy on CTW tree graph(s).
ctwmcmctreeCTWMCMCTREE Build full CTW tree graph(s) from data.
directbinDIRECTBIN Bin spike trains for direct method analysis.
directcatDIRECTCAT Direct method analysis to determine category-specific information.
directcat_jackDIRECTCAT_JACK Direct method analysis to determine category-specific information with leave-one-out jackknife.
directcat_shufDIRECTCAT_SHUF Direct method analysis to determine category-specific information with shuffled inputs.
directcondcatDIRECTCONDCAT Condition data on category.
directcondformalDIRECTCONDFORMAL Condition data on both category and time slice.
directcondtimeDIRECTCONDTIME Condition data on time slice.
directcountclassDIRECTCOUNTCLASS Count spike train words in each class.
directcountcondDIRECTCOUNTCOND Count spike train words in each class and disregarding class.
directcounttotalDIRECTCOUNTTOTAL Count spike train words disregarding class.
directformalDIRECTFORMAL Direct method analysis to determine formal information.
entropy1dENTROPY1D Entropy from a 1-D histogram.
entropy1dvecENTROPY1DVEC Entropy from a vector of 1-D histograms.
info2dINFO2D Information and entropies from a 2-D histogram.
infocondINFOCOND Information and entropies from conditional and total
makeMAKE Compile functions in the Spike Train Analysis Toolkit.
match_rateMATCH_RATE Redraw samples to match spike rate
matrix2hist2dMATRIX2HIST2D Converts a 2-D matrix of counts to a 2-D histogram.
metricMETRIC Metric space analysis
metric_jackMETRIC_JACK Metric space analysis with leave-one-out jackknife.
metric_shufMETRIC_SHUF Metric space analysis with shuffled inputs.
metricclustMETRICCLUST Cluster spike trains based on distance matrix.
metricdistMETRICDIST Compute distances between sets of spike train pairs.
metricopenMETRICOPEN Prepare input data structure for metric space analysis.
multisitearrayMULTISITEARRAY Convert a multi-site input data structure
multisitesubsetMULTISITESUBSET Extract a subset of sites from a multi-site
staplotSTAPLOT Plot of a continuous signal input data structure.
starasterSTARASTER Raster plot of an input data structure.
stareadSTAREAD Read STAD and STAM files into an input data structure.
staversionSTAVERSION Return the version and revision number of the Spike Train Analysis Toolkit.
stawriteSTAWRITE Write STAD and STAM files from an input data structure.

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